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Moved NHashMap to sting/utils 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2452 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2009-12-28 20:57:32 +00:00
parent 562db45fa5
commit 92e3682991
3 changed files with 4 additions and 5 deletions
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3
java/src/org/broadinstitute/sting/analyzecovariates/AnalysisDataManager.java
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@ -1,7 +1,7 @@
package org.broadinstitute.sting.analyzecovariates;
import org.broadinstitute.sting.gatk.walkers.recalibration.RecalDatum;
import org.broadinstitute.sting.gatk.walkers.recalibration.NHashMap;
import org.broadinstitute.sting.utils.NHashMap;
import java.util.ArrayList;
import java.util.List;
@ -35,6 +35,7 @@ public class AnalysisDataManager {
* Add the given mapping to all of the collapsed hash tables
* @param key The list of comparables that is the key for this mapping
* @param fullDatum The RecalDatum which is the data for this mapping
* @param IGNORE_QSCORES_LESS_THAN The threshold in report quality for adding to the aggregate collapsed table
*/
public final void addToAllTables( final List<? extends Comparable> key, final RecalDatum fullDatum, final int IGNORE_QSCORES_LESS_THAN ) {

1
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/RecalDataManager.java
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@ -5,6 +5,7 @@ import org.broadinstitute.sting.utils.Utils;
import org.broadinstitute.sting.utils.StingException;
import org.broadinstitute.sting.utils.BaseUtils;
import org.broadinstitute.sting.utils.sam.GATKSAMRecord;
import org.broadinstitute.sting.utils.NHashMap;
import java.util.*;

5
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/NHashMap.java → java/src/org/broadinstitute/sting/utils/NHashMap.java
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@ -1,7 +1,4 @@
package org.broadinstitute.sting.gatk.walkers.recalibration;
import org.broadinstitute.sting.utils.Pair;
import org.broadinstitute.sting.utils.StingException;
package org.broadinstitute.sting.utils;
import java.util.*;