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Added back lines that update the *big-table-header.txt file before using it 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3506 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
weisburd 2010-06-08 22:45:41 +00:00
parent 3c24223d02
commit 92c72d3361
1 changed files with 4 additions and 4 deletions
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8
python/genomicAnnotatorScripts/ConcatTranscriptToInfoResults.py
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@ -57,10 +57,10 @@ if ucsc: # NCBI doesn't have the _random contigs
dir_plus_prefix = os.path.join(directory,prefix)
# Update the *-big-table-header.txt header file using the header from one of the single-contig files.
#command = "head -n 1 " + dir_plus_prefix + ("-big-table-ucsc-%s.txt " % contigs[0]) + " > " + dir_plus_prefix + "-big-table-header.txt"
#print(command)
#os.system(command)
# Update the *-big-table-header.txt header file using the header from one of the single-contig files - in case TranscriptToInfo was changed with columns being added or removed.
command = "head -n 1 " + dir_plus_prefix + ("-big-table-ucsc-%s.txt " % contigs[0]) + " > " + dir_plus_prefix + "-big-table-header.txt"
print(command)
os.system(command)
# Concatenate