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It's just "lod" not discovery_lod now. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1427 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
jmaguire 2009-08-17 18:44:09 +00:00
parent df5744bcd3
commit 92c63fb530
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/refdata/PooledEMSNPROD.java
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@ -40,7 +40,7 @@ public class PooledEMSNPROD extends TabularROD implements SNPCallFromGenotypes {
public double getMAF() { return Double.parseDouble(this.get("EM_alt_freq")); }
public double getHeterozygosity() { return 2 * getMAF() * (1 - getMAF()); }
public boolean isGenotype() { return false; }
public double getVariationConfidence() { return Double.parseDouble(this.get("discovery_lod")); }
public double getVariationConfidence() { return Double.parseDouble(this.get("lod")); }
public double getConsensusConfidence() { return -1; }
public List<String> getGenotype() throws IllegalStateException { throw new IllegalStateException(); }
public int getPloidy() throws IllegalStateException { return 2; }