AssessNA12878 now emits a simplified assessment table by default

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-- New report collapses the detailed states in the 5 key states: TP, FP, FN, TN, unknown, such as in the following example:

Name     VariantType  AssessmentType           Count
variant  SNPS         TRUE_POSITIVE                6
variant  SNPS         FALSE_POSITIVE               9
variant  SNPS         FALSE_NEGATIVE            1213
variant  SNPS         TRUE_NEGATIVE              172
variant  SNPS         CALLED_NOT_IN_DB_AT_ALL      0
variant  INDELS       TRUE_POSITIVE               19
variant  INDELS       FALSE_POSITIVE              13
variant  INDELS       FALSE_NEGATIVE             262
variant  INDELS       TRUE_NEGATIVE               57
variant  INDELS       CALLED_NOT_IN_DB_AT_ALL     39

-- Use --detailed to see the previous full version
-- Expanded unittests for Assessment

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This commit is contained in:

Mark DePristo 2013-03-01 15:41:30 -05:00

parent b5a07da04c

commit 92ac9e7f65

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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