From 92676c63cab236436e60daf4954ebc8bdbd459d1 Mon Sep 17 00:00:00 2001 From: Guillermo del Angel Date: Thu, 22 Mar 2012 12:13:59 -0400 Subject: [PATCH] Make constructor of IndelGenotypeLikelihoodsCalculationModel public so it can be used in unit tests --- .../genotyper/IndelGenotypeLikelihoodsCalculationModel.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java index 1b73ef1d7..f6a5874cd 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java @@ -79,7 +79,7 @@ public class IndelGenotypeLikelihoodsCalculationModel extends GenotypeLikelihood } - protected IndelGenotypeLikelihoodsCalculationModel(UnifiedArgumentCollection UAC, Logger logger) { + public IndelGenotypeLikelihoodsCalculationModel(UnifiedArgumentCollection UAC, Logger logger) { super(UAC, logger); pairModel = new PairHMMIndelErrorModel(UAC.INDEL_GAP_OPEN_PENALTY, UAC.INDEL_GAP_CONTINUATION_PENALTY, UAC.OUTPUT_DEBUG_INDEL_INFO, !UAC.DONT_DO_BANDED_INDEL_COMPUTATION);