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Make constructor of IndelGenotypeLikelihoodsCalculationModel public so it can be used in unit tests

This commit is contained in:
Guillermo del Angel 2012-03-22 12:13:59 -04:00
parent eca055ccad
commit 92676c63ca
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java
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@ -79,7 +79,7 @@ public class IndelGenotypeLikelihoodsCalculationModel extends GenotypeLikelihood
}
protected IndelGenotypeLikelihoodsCalculationModel(UnifiedArgumentCollection UAC, Logger logger) {
public IndelGenotypeLikelihoodsCalculationModel(UnifiedArgumentCollection UAC, Logger logger) {
super(UAC, logger);
pairModel = new PairHMMIndelErrorModel(UAC.INDEL_GAP_OPEN_PENALTY, UAC.INDEL_GAP_CONTINUATION_PENALTY,
UAC.OUTPUT_DEBUG_INDEL_INFO, !UAC.DONT_DO_BANDED_INDEL_COMPUTATION);