From 92307361a4072555d44bd21a1df31cdcadd9dc7f Mon Sep 17 00:00:00 2001 From: depristo Date: Sun, 13 Dec 2009 18:28:06 +0000 Subject: [PATCH] In preparation for move git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2344 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/CountRodByRefWalker.java | 3 ++- .../org/broadinstitute/sting/gatk/walkers/CountRodWalker.java | 4 ++++ 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/CountRodByRefWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/CountRodByRefWalker.java index 9106d527a..0a3ca4ac2 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/CountRodByRefWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/CountRodByRefWalker.java @@ -11,7 +11,8 @@ import java.util.ArrayList; import java.util.List; /** - * Same as CountRod but this one is a reference walker + * A very simple walker that prints out counts of the number of reference ordered data objects are + * each locus. For debugging RefWalkers. */ public class CountRodByRefWalker extends RefWalker, Long>> { @Argument(fullName = "verbose", shortName = "v", doc="If true, Countrod will print out detailed information about the rods it finds and locations", required = false) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/CountRodWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/CountRodWalker.java index 829bfbdb9..c4b2c1342 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/CountRodWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/CountRodWalker.java @@ -13,6 +13,10 @@ import java.util.List; import java.util.Collection; import java.util.LinkedList; +/** + * A very simple walker that prints out counts of the number of reference ordered data objects are + * each locus. For debugging RodWalkers. + */ public class CountRodWalker extends RodWalker, Long>> { @Argument(fullName = "verbose", shortName = "v", doc="If true, Countrod will print out detailed information about the rods it finds and locations", required = false) public boolean verbose = false;