diff --git a/public/java/src/org/broadinstitute/sting/utils/DeprecatedToolChecks.java b/public/java/src/org/broadinstitute/sting/utils/DeprecatedToolChecks.java
index e20872c5b..78c32ed02 100644
--- a/public/java/src/org/broadinstitute/sting/utils/DeprecatedToolChecks.java
+++ b/public/java/src/org/broadinstitute/sting/utils/DeprecatedToolChecks.java
@@ -43,7 +43,6 @@ public class DeprecatedToolChecks {
     static {
         // Indicate recommended replacement in parentheses if applicable
         deprecatedGATKWalkers.put("CountCovariates", "2.0 (use BaseRecalibrator instead; see documentation for usage)");
-        deprecatedGATKWalkers.put("AnalyzeCovariates", "2.0 (use BaseRecalibrator instead; see documentation for usage)");
         deprecatedGATKWalkers.put("TableRecalibration", "2.0 (use PrintReads with -BQSR instead; see documentation for usage)");
         deprecatedGATKWalkers.put("AlignmentWalker", "2.2 (no replacement)");
         deprecatedGATKWalkers.put("CountBestAlignments", "2.2 (no replacement)");