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RemapAlignments is a standalone picard-level tool that does not use gatk engine; moved to 'tools' 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1396 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2009-08-10 15:41:07 +00:00
parent b7768830c5
commit 921d4f4e95
1 changed files with 2 additions and 1 deletions
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3
java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java → java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.playground.utils; package org.broadinstitute.sting.playground.tools;
import java.io.File; import java.io.File;
import java.util.Comparator; import java.util.Comparator;
@ -6,6 +6,7 @@ import java.util.Set;
import java.util.TreeSet; import java.util.TreeSet;
import java.util.Map.Entry; import java.util.Map.Entry;
import org.broadinstitute.sting.playground.utils.GenomicMap;
import org.broadinstitute.sting.utils.GenomeLocParser; import org.broadinstitute.sting.utils.GenomeLocParser;
import net.sf.picard.cmdline.CommandLineProgram; import net.sf.picard.cmdline.CommandLineProgram;