From 921d4f4e95dc00431508be3e2da92948da61469b Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 10 Aug 2009 15:41:07 +0000
Subject: [PATCH] RemapAlignments is a standalone picard-level tool that does
 not use gatk engine; moved to 'tools'

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1396 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/{utils => tools}/RemapAlignments.java     | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)
 rename java/src/org/broadinstitute/sting/playground/{utils => tools}/RemapAlignments.java (98%)

diff --git a/java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java b/java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java
similarity index 98%
rename from java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java
rename to java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java
index 02d6861e8..a1aee5d36 100644
--- a/java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java
+++ b/java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.utils;
+package org.broadinstitute.sting.playground.tools;
 
 import java.io.File;
 import java.util.Comparator;
@@ -6,6 +6,7 @@ import java.util.Set;
 import java.util.TreeSet;
 import java.util.Map.Entry;
 
+import org.broadinstitute.sting.playground.utils.GenomicMap;
 import org.broadinstitute.sting.utils.GenomeLocParser;
 
 import net.sf.picard.cmdline.CommandLineProgram;