diff --git a/java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java b/java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java similarity index 98% rename from java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java rename to java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java index 02d6861e8..a1aee5d36 100644 --- a/java/src/org/broadinstitute/sting/playground/utils/RemapAlignments.java +++ b/java/src/org/broadinstitute/sting/playground/tools/RemapAlignments.java @@ -1,4 +1,4 @@ -package org.broadinstitute.sting.playground.utils; +package org.broadinstitute.sting.playground.tools; import java.io.File; import java.util.Comparator; @@ -6,6 +6,7 @@ import java.util.Set; import java.util.TreeSet; import java.util.Map.Entry; +import org.broadinstitute.sting.playground.utils.GenomicMap; import org.broadinstitute.sting.utils.GenomeLocParser; import net.sf.picard.cmdline.CommandLineProgram;