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misc cleanup 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2171 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2009-11-27 19:56:20 +00:00
parent d1298dda13
commit 91f5672a32
2 changed files with 1 additions and 5 deletions
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4
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CovariateCounterWalker.java
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@ -18,8 +18,6 @@ import java.io.FileNotFoundException;
import java.util.*; import java.util.*;
import net.sf.samtools.SAMRecord; import net.sf.samtools.SAMRecord;
import net.sf.samtools.SAMReadGroupRecord;
import edu.mit.broad.picard.illumina.parser.IlluminaUtil;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
@ -383,7 +381,7 @@ public class CovariateCounterWalker extends LocusWalker<Integer, PrintStream> {
} }
/** /**
* Validate the dbSNP mismatch rates. * Validate the dbSNP reference mismatch rates.
*/ */
private void validateDbsnpMismatchRate() { private void validateDbsnpMismatchRate() {
if( novel_counts.second == 0 || dbSNP_counts.second == 0 ) { if( novel_counts.second == 0 || dbSNP_counts.second == 0 ) {

2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java
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@ -16,8 +16,6 @@ import java.util.regex.Pattern;
import java.io.File; import java.io.File;
import java.io.FileNotFoundException; import java.io.FileNotFoundException;
import edu.mit.broad.picard.illumina.parser.IlluminaUtil;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *