From 91f5672a32de11a9306d51a786afb043915c76d5 Mon Sep 17 00:00:00 2001 From: rpoplin Date: Fri, 27 Nov 2009 19:56:20 +0000 Subject: [PATCH] misc cleanup git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2171 348d0f76-0448-11de-a6fe-93d51630548a --- .../gatk/walkers/recalibration/CovariateCounterWalker.java | 4 +--- .../gatk/walkers/recalibration/TableRecalibrationWalker.java | 2 -- 2 files changed, 1 insertion(+), 5 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CovariateCounterWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CovariateCounterWalker.java index e6c19004b..bcc352d60 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CovariateCounterWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CovariateCounterWalker.java @@ -18,8 +18,6 @@ import java.io.FileNotFoundException; import java.util.*; import net.sf.samtools.SAMRecord; -import net.sf.samtools.SAMReadGroupRecord; -import edu.mit.broad.picard.illumina.parser.IlluminaUtil; /* * Copyright (c) 2009 The Broad Institute @@ -383,7 +381,7 @@ public class CovariateCounterWalker extends LocusWalker { } /** - * Validate the dbSNP mismatch rates. + * Validate the dbSNP reference mismatch rates. */ private void validateDbsnpMismatchRate() { if( novel_counts.second == 0 || dbSNP_counts.second == 0 ) { diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java index c0ab680f0..a360609a0 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java @@ -16,8 +16,6 @@ import java.util.regex.Pattern; import java.io.File; import java.io.FileNotFoundException; -import edu.mit.broad.picard.illumina.parser.IlluminaUtil; - /* * Copyright (c) 2009 The Broad Institute *