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fixing pipeline tests (sorry, my bad)

This commit is contained in:
Mauricio Carneiro 2012-06-26 17:10:58 -04:00
parent 334d66f2b1
commit 91f02dfd85
1 changed files with 0 additions and 2 deletions
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2
public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala
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@ -39,7 +39,6 @@ class DataProcessingPipelineTest {
" -R " + BaseTest.testDir + "exampleFASTA.fasta", " -R " + BaseTest.testDir + "exampleFASTA.fasta",
" -i " + BaseTest.testDir + "exampleBAM.bam", " -i " + BaseTest.testDir + "exampleBAM.bam",
" -D " + BaseTest.testDir + "exampleDBSNP.vcf", " -D " + BaseTest.testDir + "exampleDBSNP.vcf",
" -nv ",
" -test ", " -test ",
" -p " + projectName).mkString " -p " + projectName).mkString
spec.fileMD5s += testOut -> "1f85e76de760167a77ed1d9ab4da2936" spec.fileMD5s += testOut -> "1f85e76de760167a77ed1d9ab4da2936"
@ -57,7 +56,6 @@ class DataProcessingPipelineTest {
" -R " + BaseTest.testDir + "exampleFASTA.fasta", " -R " + BaseTest.testDir + "exampleFASTA.fasta",
" -i " + BaseTest.testDir + "exampleBAM.bam", " -i " + BaseTest.testDir + "exampleBAM.bam",
" -D " + BaseTest.testDir + "exampleDBSNP.vcf", " -D " + BaseTest.testDir + "exampleDBSNP.vcf",
" -nv ",
" -test ", " -test ",
" -bwa /home/unix/carneiro/bin/bwa", " -bwa /home/unix/carneiro/bin/bwa",
" -bwape ", " -bwape ",