From 91f02dfd851c5449fd55538b34b5fa023e8c2c1b Mon Sep 17 00:00:00 2001
From: Mauricio Carneiro <carneiro@broadinstitute.org>
Date: Tue, 26 Jun 2012 17:10:58 -0400
Subject: [PATCH] fixing pipeline tests (sorry, my bad)

---
 .../sting/queue/pipeline/DataProcessingPipelineTest.scala       | 2 --
 1 file changed, 2 deletions(-)

diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala
index 7e1d09b70..cf4adefe6 100644
--- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala
+++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala
@@ -39,7 +39,6 @@ class DataProcessingPipelineTest {
       " -R " + BaseTest.testDir + "exampleFASTA.fasta",
       " -i " + BaseTest.testDir + "exampleBAM.bam",
       " -D " + BaseTest.testDir + "exampleDBSNP.vcf",
-      " -nv ",
       " -test ",
       " -p " + projectName).mkString
     spec.fileMD5s += testOut -> "1f85e76de760167a77ed1d9ab4da2936"
@@ -57,7 +56,6 @@ class DataProcessingPipelineTest {
       " -R " + BaseTest.testDir + "exampleFASTA.fasta",
       " -i " + BaseTest.testDir + "exampleBAM.bam",
       " -D " + BaseTest.testDir + "exampleDBSNP.vcf",
-      " -nv ",
       " -test ",
       " -bwa /home/unix/carneiro/bin/bwa",
       " -bwape ",