From 91297c138b90541c56a4dae0d6960c20b1178024 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 1 Feb 2011 15:40:43 +0000
Subject: [PATCH] Update VCFStreamingIntegrationTest to use new variant eval
 command-line arguments, output format.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5162 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/variantutils/VCFStreamingIntegrationTest.java   | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java
index 2d51ff3eb..275345fa8 100644
--- a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java
@@ -95,10 +95,10 @@ public class VCFStreamingIntegrationTest extends WalkerTest {
             " -R " + b36KGReference +
             " -B:eval,vcf " + testFile +
             " -B:comp,vcf,storage=STREAM " + tmpFifo.getAbsolutePath() +
-            " -E CompOverlap -noStandard" +
-            " -reportType CSV -o %s",
+            " -EV CompOverlap -noEV" +
+            " -o %s",
             1,
-            Arrays.asList("f7df3ac0777b1a45aa7a58228a290600")
+            Arrays.asList("99b4edbd70e6540f39c929b435ecd8e7")
         );
         executeTest("testVCFStreamingChain", selectTestSpec);