diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java index 2d51ff3eb..275345fa8 100644 --- a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java @@ -95,10 +95,10 @@ public class VCFStreamingIntegrationTest extends WalkerTest { " -R " + b36KGReference + " -B:eval,vcf " + testFile + " -B:comp,vcf,storage=STREAM " + tmpFifo.getAbsolutePath() + - " -E CompOverlap -noStandard" + - " -reportType CSV -o %s", + " -EV CompOverlap -noEV" + + " -o %s", 1, - Arrays.asList("f7df3ac0777b1a45aa7a58228a290600") + Arrays.asList("99b4edbd70e6540f39c929b435ecd8e7") ); executeTest("testVCFStreamingChain", selectTestSpec);