Update VCFStreamingIntegrationTest to use new variant eval command-line

arguments, output format.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5162 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2011-02-01 15:40:43 +00:00
parent 7d89ce820b
commit 91297c138b
1 changed files with 3 additions and 3 deletions

View File

@ -95,10 +95,10 @@ public class VCFStreamingIntegrationTest extends WalkerTest {
" -R " + b36KGReference +
" -B:eval,vcf " + testFile +
" -B:comp,vcf,storage=STREAM " + tmpFifo.getAbsolutePath() +
" -E CompOverlap -noStandard" +
" -reportType CSV -o %s",
" -EV CompOverlap -noEV" +
" -o %s",
1,
Arrays.asList("f7df3ac0777b1a45aa7a58228a290600")
Arrays.asList("99b4edbd70e6540f39c929b435ecd8e7")
);
executeTest("testVCFStreamingChain", selectTestSpec);