Update VCFStreamingIntegrationTest to use new variant eval command-line
arguments, output format. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5162 348d0f76-0448-11de-a6fe-93d51630548a
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@ -95,10 +95,10 @@ public class VCFStreamingIntegrationTest extends WalkerTest {
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" -R " + b36KGReference +
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" -B:eval,vcf " + testFile +
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" -B:comp,vcf,storage=STREAM " + tmpFifo.getAbsolutePath() +
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" -E CompOverlap -noStandard" +
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" -reportType CSV -o %s",
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" -EV CompOverlap -noEV" +
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" -o %s",
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1,
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Arrays.asList("f7df3ac0777b1a45aa7a58228a290600")
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Arrays.asList("99b4edbd70e6540f39c929b435ecd8e7")
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);
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executeTest("testVCFStreamingChain", selectTestSpec);
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