diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java index 2159da6e6..34be88dbb 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java @@ -401,11 +401,6 @@ public class UnifiedGenotyperEngine { // *** note that calculating strand bias involves overwriting data structures, so we do that last final HashMap attributes = new HashMap(); - List mlecounts = new ArrayList(AFresult.log10AlleleFrequencyPosteriors.length); - for ( int i = 0; i < AFresult.log10AlleleFrequencyLikelihoods.length ; i++) { - mlecounts.add(MathUtils.maxElementIndex(AFresult.log10AlleleFrequencyLikelihoods[i])); - } - attributes.put("MLEAC",Utils.join(",",mlecounts)); // if the site was downsampled, record that fact if ( !limitedContext && rawContext.hasPileupBeenDownsampled() )