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Band-Aid: changed the pointers from mike's home directory to a checkout of the last know working revision r7169 in my directory. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2946 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-03-07 04:19:01 +00:00
parent ee2ec7ced9
commit 8f4fbf29a7
1 changed files with 5 additions and 3 deletions
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8
perl/maf_annotation/annotate_single_maf.pl
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@ -7,10 +7,12 @@ if (scalar(@ARGV) != 1) {
my ($maf) = @ARGV;
# TODO: Have a common checkout of https://svn/CancerGenomeAnalysis
# or a compiled version of this matlab program like Firehose uses.
my $cmd = "matlab <<STOP\n" .
"addpath /home/radon00/lawrence/CancerGenomeAnalysis/trunk/matlab/mike" . "\n" .
"addpath /home/radon00/lawrence/CancerGenomeAnalysis/trunk/matlab/seq" . "\n" .
"addpath /home/radon00/lawrence/CancerGenomeAnalysis/trunk/matlab" . "\n" .
"addpath /humgen/gsa-hphome1/kshakir/src/cga_matlab_r7169/mike" . "\n" .
"addpath /humgen/gsa-hphome1/kshakir/src/cga_matlab_r7169/seq" . "\n" .
"addpath /humgen/gsa-hphome1/kshakir/src/cga_matlab_r7169" . "\n" .
"annotate_maflite('$maf', '$maf.annotated')" . "\n" .
"quit" . "\n" .
"STOP" . "\n";