Ant-based walker dependency analyzer

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-Given a list of walkers and a pair of git commits, determines whether each of the
 walkers has compile-time dependencies on the Java classes changed between the two
 commits.

-Output is in the form of a Java properties file, and can be easily loaded via
 the Properties class. Example output:

 org.broadinstitute.sting.gatk.walkers.bed.MergeIntervalLists=true
 org.broadinstitute.sting.gatk.walkers.genotyper.UnifiedGenotyper=false
 org.broadinstitute.sting.gatk.walkers.haplotypecaller.HaplotypeCaller=false
 org.broadinstitute.sting.gatk.walkers.na12878kb.NA12878DBWalker=true
 org.broadinstitute.sting.gatk.walkers.readutils.PrintReads=false

 "true" indicates that the walker does have compile-time dependencies on one or
 more of the changed Java classes, "false" indicates no dependencies

-Considers classes within changed jar files as well, provided the jars are stored
 in our git repository (as they are with tribble, picard, etc.)

-Ant-based solution with a shell script frontend. The previous Java-based solution
 had several issues and introduced problematic dependencies into the GATK.

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This commit is contained in:

David Roazen 2013-06-25 15:18:47 -04:00

parent c3d59d890d

commit 8eab59419d

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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