From 8e46d5de04b02f0c9d6e779132c60bf23e19f88a Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 13 Aug 2010 19:26:53 +0000
Subject: [PATCH] Printing to INFO where to find the job output files.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4029 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/queue/engine/ShellJobRunner.scala | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/scala/src/org/broadinstitute/sting/queue/engine/ShellJobRunner.scala b/scala/src/org/broadinstitute/sting/queue/engine/ShellJobRunner.scala
index 834ae64a2..e2088c6b4 100755
--- a/scala/src/org/broadinstitute/sting/queue/engine/ShellJobRunner.scala
+++ b/scala/src/org/broadinstitute/sting/queue/engine/ShellJobRunner.scala
@@ -24,6 +24,13 @@ class ShellJobRunner extends JobRunner with Logging {
     } else {
       logger.info(function.commandLine)
     }
+    logger.info("Output written to " + function.jobOutputFile)
+    if (function.jobErrorFile != null) {
+      logger.info("Errors written to " + function.jobErrorFile)
+    } else {
+      if (logger.isDebugEnabled)
+        logger.info("Errors also written to " + function.jobOutputFile)
+    }
 
     if (!qGraph.dryRun)
       job.run