From 8e2d372ab0649a003745ffbd319e64e6f5df2e25 Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Wed, 25 Jan 2012 14:41:34 -0500
Subject: [PATCH] Use remove instead of setting the value to null

---
 .../sting/gatk/walkers/genotyper/ExactAFCalculationModel.java | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java
index 24d7696b5..aee003089 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java
@@ -214,7 +214,7 @@ public class ExactAFCalculationModel extends AlleleFrequencyCalculationModel {
         // clean up memory
         if ( !preserveData ) {
             for ( ExactACcounts index : set.dependentACsetsToDelete ) {
-                indexesToACset.put(index, null);
+                indexesToACset.remove(index);
                 //if ( DEBUG )
                 //    System.out.printf(" *** removing used set=%s after seeing final dependent set=%s%n", index, set.ACcounts);
             }
@@ -229,7 +229,7 @@ public class ExactAFCalculationModel extends AlleleFrequencyCalculationModel {
 
             // no reason to keep this data around because nothing depends on it
             if ( !preserveData )
-                indexesToACset.put(set.ACcounts, null);
+                indexesToACset.remove(set.ACcounts);
 
             return log10LofK;
         }