From 8d46cf360429018151a491dfc96ab75ba7b1df39 Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 21 Jan 2011 14:44:41 +0000
Subject: [PATCH] Testing a configuration change for build system.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5043 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/queue/pipeline/FullCallingPipelineTest.scala      | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala
index d334c44e9..fffb5cfa8 100644
--- a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala
+++ b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala
@@ -111,8 +111,10 @@ class FullCallingPipelineTest extends BaseTest {
     if (dataset.jobQueue != null)
       pipelineCommand += " -jobQueue " + dataset.jobQueue
 
-    for (dir <- mountDirectories)
-      pipelineCommand += " -mountDir " + dir
+    //for (dir <- mountDirectories)
+    //  pipelineCommand += " -mountDir " + dir
+    if (PipelineTest.run)
+      System.getenv.foreach{case (name, value) => println("DEBUG_ENVIRONMENT: %s=%s".format(name, value))}
 
     // Run the test, at least checking if the command compiles
     PipelineTest.executeTest(testName, pipelineCommand, null)