diff --git a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala index d334c44e9..fffb5cfa8 100644 --- a/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala +++ b/scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala @@ -111,8 +111,10 @@ class FullCallingPipelineTest extends BaseTest { if (dataset.jobQueue != null) pipelineCommand += " -jobQueue " + dataset.jobQueue - for (dir <- mountDirectories) - pipelineCommand += " -mountDir " + dir + //for (dir <- mountDirectories) + // pipelineCommand += " -mountDir " + dir + if (PipelineTest.run) + System.getenv.foreach{case (name, value) => println("DEBUG_ENVIRONMENT: %s=%s".format(name, value))} // Run the test, at least checking if the command compiles PipelineTest.executeTest(testName, pipelineCommand, null)