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Merge pull request #1303 from broadinstitute/rhl_fix_test_ranksums 

Modify MD5s to correct RankSum annotations
This commit is contained in:
ldgauthier 2016-03-01 16:09:29 -05:00
parent 625941dc50 e5c5804141
commit 8c15d3ccd8
2 changed files with 2 additions and 2 deletions
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2
protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/annotator/VariantAnnotatorIntegrationTest.java
View File

@ -424,7 +424,7 @@ public class VariantAnnotatorIntegrationTest extends WalkerTest {
@Test
public void testStrandAlleleCountsBySample() {
final String MD5 = "93e424f866f03ac23f9ddac94401e348";
final String MD5 = "dca6c2b416076ca89769a322cae65bb8";
final WalkerTestSpec spec = new WalkerTestSpec(
"-T HaplotypeCaller --disableDithering " +
String.format("-R %s -I %s ", REF, CEUTRIO_BAM) +

2
protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/haplotypecaller/HaplotypeCallerGVCFIntegrationTest.java
View File

@ -347,7 +347,7 @@ public class HaplotypeCallerGVCFIntegrationTest extends WalkerTest {
public void testHaplotypeCallerMultiAllelicNonRef() {
final String commandLine = String.format("-T HaplotypeCaller -R %s -I %s -L %s -ERC GVCF --no_cmdline_in_header -variant_index_type %s -variant_index_parameter %d -A StrandAlleleCountsBySample",
b37KGReference, privateTestDir + "multiallelic-nonref.bam", "2:47641259-47641859", GATKVCFUtils.DEFAULT_GVCF_INDEX_TYPE, GATKVCFUtils.DEFAULT_GVCF_INDEX_PARAMETER);
final WalkerTestSpec spec = new WalkerTestSpec(commandLine + " -o %s", Arrays.asList("ba2df96afbf5fe2a59270b6e65c3fb4e"));
final WalkerTestSpec spec = new WalkerTestSpec(commandLine + " -o %s", Arrays.asList("2bd863f0b54b9c9a5014097cd3d3f61a"));
spec.disableShadowBCF();
executeTest(" testHaplotypeCallerMultiAllelicNonRef", spec);
}