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add the new gather tool to GATKExtensionsGenerator

This commit is contained in:
Ami Levy-Moonshine 2012-12-21 15:09:00 -05:00
parent c8cd6ac465
commit 8be01af145
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
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@ -193,6 +193,7 @@ public class GATKExtensionsGenerator extends CommandLineProgram {
* The list of packages to search through. * The list of packages to search through.
*/ */
private static final List<String> gatkPackages = Arrays.asList( private static final List<String> gatkPackages = Arrays.asList(
"org.broadinstitute.sting.tools",
"org.broadinstitute.sting.gatk", "org.broadinstitute.sting.gatk",
"org.broadinstitute.sting.pipeline", "org.broadinstitute.sting.pipeline",
"org.broadinstitute.sting.gatk.datasources.reads.utilities"); "org.broadinstitute.sting.gatk.datasources.reads.utilities");