From 8be01af145dd24d2d020e9fa5948ac9104505ffa Mon Sep 17 00:00:00 2001
From: Ami Levy-Moonshine <ami@broadinstitute.org>
Date: Fri, 21 Dec 2012 15:09:00 -0500
Subject: [PATCH] add the new gather tool to GATKExtensionsGenerator

---
 .../sting/queue/extensions/gatk/GATKExtensionsGenerator.java     | 1 +
 1 file changed, 1 insertion(+)

diff --git a/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java b/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
index 883436582..060420e3b 100644
--- a/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
+++ b/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
@@ -193,6 +193,7 @@ public class GATKExtensionsGenerator extends CommandLineProgram {
      * The list of packages to search through.
      */
     private static final List<String> gatkPackages = Arrays.asList(
+            "org.broadinstitute.sting.tools",
             "org.broadinstitute.sting.gatk",
             "org.broadinstitute.sting.pipeline",
             "org.broadinstitute.sting.gatk.datasources.reads.utilities");