add the new gather tool to GATKExtensionsGenerator

2012-12-21 15:09:00 -05:00 · 2012-12-21 15:09:00 -05:00 · 8be01af145
parent c8cd6ac465
commit 8be01af145
1 changed files with 1 additions and 0 deletions
--- a/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
+++ b/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
@ -193,6 +193,7 @@ public class GATKExtensionsGenerator extends CommandLineProgram {
     * The list of packages to search through.
     */
    private static final List<String> gatkPackages = Arrays.asList(
+            "org.broadinstitute.sting.tools",
            "org.broadinstitute.sting.gatk",
            "org.broadinstitute.sting.pipeline",
            "org.broadinstitute.sting.gatk.datasources.reads.utilities");