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Merge branch 'master' of ssh://gsa3.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Khalid Shakir 2011-07-21 23:01:11 -04:00
parent 59eb1f4663 87f991aee7
commit 8b8f121cfb
2 changed files with 3 additions and 2 deletions
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1
public/java/src/org/broadinstitute/sting/gatk/walkers/validation/ValidationAmplicons.java
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@ -233,6 +233,7 @@ public class ValidationAmplicons extends RodWalker<Integer,Integer> {
lowerRepeats(); lowerRepeats();
} else { } else {
lowerNonUniqueSegments(); lowerNonUniqueSegments();
aligner.close();
} }
print(); print();
} }

4
public/java/test/org/broadinstitute/sting/gatk/walkers/validation/ValidationAmpliconsIntegrationTest.java
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@ -14,7 +14,7 @@ import java.util.Arrays;
*/ */
public class ValidationAmpliconsIntegrationTest extends WalkerTest { public class ValidationAmpliconsIntegrationTest extends WalkerTest {
@Test(enabled=false) @Test(enabled=true)
public void testWikiExample() { public void testWikiExample() {
String siteVCF = validationDataLocation + "sites_to_validate.vcf"; String siteVCF = validationDataLocation + "sites_to_validate.vcf";
String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf"; String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf";
@ -40,7 +40,7 @@ public class ValidationAmpliconsIntegrationTest extends WalkerTest {
executeTest("Test probes", spec); executeTest("Test probes", spec);
} }
@Test(enabled=false) @Test(enabled=true)
public void testWikiExampleMonoFilter() { public void testWikiExampleMonoFilter() {
String siteVCF = validationDataLocation + "sites_to_validate.vcf"; String siteVCF = validationDataLocation + "sites_to_validate.vcf";
String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf"; String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf";