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Merge pull request #1391 from broadinstitute/rhl_htsjdk_picard_2.4.1 

Move htsjdk and picard to version 2.4.1
This commit is contained in:
Geraldine Van der Auwera 2016-06-01 06:49:16 -04:00
parent 801aa49d25 30665c7dbc
commit 8b24e3bd65
2 changed files with 3 additions and 3 deletions
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2
protected/gatk-tools-protected/src/test/java/org/broadinstitute/gatk/tools/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
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@ -196,7 +196,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
VRTest bcfTest = new VRTest(privateTestDir + "vqsr.bcf_test.snps.unfiltered.bcf", VRTest bcfTest = new VRTest(privateTestDir + "vqsr.bcf_test.snps.unfiltered.bcf",
"3ad7f55fb3b072f373cbce0b32b66df4", // tranches "3ad7f55fb3b072f373cbce0b32b66df4", // tranches
"48c21792897bdbb9adcc64886d03c5d1", // recal file "051a3b8c15988ee4cd86ae918bec896b", // recal file
"93a6e7ab6cbd6ae24a5b2a6f0fd29d92"); // cut VCF "93a6e7ab6cbd6ae24a5b2a6f0fd29d92"); // cut VCF
@DataProvider(name = "VRBCFTest") @DataProvider(name = "VRBCFTest")

4
public/gatk-root/pom.xml
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@ -44,8 +44,8 @@
<test.listeners>org.testng.reporters.FailedReporter,org.testng.reporters.JUnitXMLReporter,org.broadinstitute.gatk.utils.TestNGTestTransformer,org.broadinstitute.gatk.utils.GATKTextReporter,org.uncommons.reportng.HTMLReporter</test.listeners> <test.listeners>org.testng.reporters.FailedReporter,org.testng.reporters.JUnitXMLReporter,org.broadinstitute.gatk.utils.TestNGTestTransformer,org.broadinstitute.gatk.utils.GATKTextReporter,org.uncommons.reportng.HTMLReporter</test.listeners>
<!-- Version numbers for picard and htsjdk --> <!-- Version numbers for picard and htsjdk -->
<htsjdk.version>2.3.0</htsjdk.version> <htsjdk.version>2.4.1</htsjdk.version>
<picard.version>2.3.0</picard.version> <picard.version>2.4.1</picard.version>
</properties> </properties>
<!-- Dependency configuration (versions, etc.) --> <!-- Dependency configuration (versions, etc.) -->