From 8a895f481f0a43f31ac5b22769c74f42a8839bff Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 15 Jun 2010 01:38:36 +0000
Subject: [PATCH] Proper exception chaining for troubleshooting Sendu's issue.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3556 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../simpleDataSources/ReferenceOrderedDataSource.java         | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java b/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
index fe56bca0b..1b4a3068d 100755
--- a/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
+++ b/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
@@ -214,7 +214,7 @@ class ReferenceOrderedQueryDataPool extends ResourcePool<FeatureReader, Location
                 return new SeekableRODIterator(new FeatureToGATKFeatureIterator(resource.iterator(),rod.getName()));
             }
         } catch (IOException e) {
-            throw new StingException("Unable to create iterator for rod named " + rod.getName());
+            throw new StingException("Unable to create iterator for rod named " + rod.getName(),e);
         }
     }
 
@@ -223,7 +223,7 @@ class ReferenceOrderedQueryDataPool extends ResourcePool<FeatureReader, Location
         try {
             resource.close();
         } catch (IOException e) {
-            throw new StingException("Unable to close reader for rod named " + rod.getName());
+            throw new StingException("Unable to close reader for rod named " + rod.getName(),e);
         }
     }
 }