From 8a402024c237292ffef81093f99ea3d74d3721e3 Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Tue, 30 Oct 2012 09:11:56 -0400 Subject: [PATCH] Updating bundle script to handle new naming convention of CEU trio best practices callset --- .../sting/queue/qscripts/GATKResourcesBundle.scala | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala index 9e8815762..951e380c3 100755 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala @@ -141,8 +141,8 @@ class GATKResourcesBundle extends QScript { // CEU trio (NA12878,NA12891,NA12892) best practices results (including PBT) // - addResource(new Resource("/humgen/gsa-hpprojects/NA12878Collection/callsets/CEUtrio_BestPractices/current/CEUTrio.HiSeq.WGS.b37.UG.snps_and_indels.recalibrated.filtered.phaseByTransmission.vcf", - "CEUTrio.HiSeq.WGS.b37.UG.bestPractices.phaseByTransmission",b37,true,false)) + addResource(new Resource("/humgen/gsa-hpprojects/NA12878Collection/callsets/CEUtrio_BestPractices/CEUTrio.HiSeq.WGS.b37.snps_and_indels.recalibrated.filtered.phased.CURRENT.vcf", + "CEUTrio.HiSeq.WGS.b37.bestPractices.phased",b37,true,false)) // // example call set for wiki tutorial