From 8a3b7d88aad5fdeeee443fb470e7955ac89391f1 Mon Sep 17 00:00:00 2001
From: carneiro <carneiro@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 31 Mar 2011 20:50:38 +0000
Subject: [PATCH] It was returning 1 when it should return 0

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5544 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/analyzecovariates/AnalyzeCovariates.java              | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/analyzecovariates/AnalyzeCovariates.java b/java/src/org/broadinstitute/sting/analyzecovariates/AnalyzeCovariates.java
index f0d903fc4..3cf43c15a 100755
--- a/java/src/org/broadinstitute/sting/analyzecovariates/AnalyzeCovariates.java
+++ b/java/src/org/broadinstitute/sting/analyzecovariates/AnalyzeCovariates.java
@@ -111,7 +111,7 @@ public class AnalyzeCovariates extends CommandLineProgram {
         callRScripts();
         System.out.println("...Done!");
 
-        return 1;
+        return 0;
     }
 
     private void initializeData() {