From 89c1762aa9fbc779dc2832546916890414b86ba8 Mon Sep 17 00:00:00 2001 From: ebanks Date: Tue, 31 Mar 2009 02:31:51 +0000 Subject: [PATCH] Apparently, no one else has tried to create a stateless walker over loci until now, as this should have come up: make sure reduce sums get transferred to the next reduce. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@232 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/gatk/traversals/TraverseByLoci.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java b/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java index 99e5c5d45..3c74e00da 100644 --- a/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java +++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraverseByLoci.java @@ -120,7 +120,7 @@ public class TraverseByLoci extends TraversalEngine { // Iterate forward to get all reference ordered data covering this locus final List rodData = getReferenceOrderedDataAtLocus(rodIters, locus.getLocation()); - walkAtLocus( walker, sum, locus, refSite, rodData ); + sum = walkAtLocus( walker, sum, locus, refSite, rodData ); //System.out.format("Working at %s\n", locus.getLocation().toString()); @@ -158,4 +158,4 @@ public class TraverseByLoci extends TraversalEngine { printProgress("loci", locus.getLocation()); return sum; } -} \ No newline at end of file +}