zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Added toString() 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3474 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
weisburd 2010-06-02 16:24:25 +00:00
parent 12c3e3ecda
commit 898a78e97d
1 changed files with 18 additions and 14 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

32
java/src/org/broadinstitute/sting/gatk/refdata/features/annotator/AnnotatorInputTableFeature.java
View File

@ -29,8 +29,6 @@ import java.util.ArrayList;
import java.util.Collections; import java.util.Collections;
import java.util.HashMap; import java.util.HashMap;
import java.util.Map; import java.util.Map;
import java.util.Set;
import java.util.Map.Entry;
import org.broad.tribble.Feature; import org.broad.tribble.Feature;
@ -40,7 +38,7 @@ import org.broad.tribble.Feature;
public class AnnotatorInputTableFeature implements Feature { public class AnnotatorInputTableFeature implements Feature {
private ArrayList<String> columnNames; private ArrayList<String> columnNames;
private HashMap<String, String> columnValues; private HashMap<String, String> columnValues; //maps colum names to column values
private String chr; private String chr;
private int start; private int start;
@ -119,17 +117,6 @@ public class AnnotatorInputTableFeature implements Feature {
} }
/**
* Returns the entry set of all column name-value pairs.
*
* @return
*/
public Set<Entry<String, String>> getEntrySet() {
return columnValues.entrySet();
}
public String getChr() { public String getChr() {
return chr; return chr;
} }
@ -256,5 +243,22 @@ public class AnnotatorInputTableFeature implements Feature {
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
for(String columnName : columnNames ) {
if(sb.length() == 0) {
sb.append("[");
} else {
sb.append(", ");
}
sb.append(columnName + "=" + columnValues.get(columnName));
}
sb.append("]");
return sb.toString();
}
} }