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Fixed typo in the name of the shell directory. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3644 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-06-25 20:59:40 +00:00
parent 75c98c42b8
commit 894ad354fa
1 changed files with 1 additions and 1 deletions
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2
scala/qscript/unifiedgenotyper_example.scala
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@ -11,7 +11,7 @@ for (bam <- inputs("bam")) {
def commandLine = gatkCommandLine("VariantEval") + "-B eval,VCF,%s -o %s".format(vcfFile, evalFile) def commandLine = gatkCommandLine("VariantEval") + "-B eval,VCF,%s -o %s".format(vcfFile, evalFile)
} }
// Make sure the Sting/scripts folder is in your path to use mergeText.sh and splitIntervals.sh. // Make sure the Sting/shell folder is in your path to use mergeText.sh and splitIntervals.sh.
ug.scatterCount = 3 ug.scatterCount = 3
ug.bamFiles :+= bam ug.bamFiles :+= bam
ug.vcfFile = swapExt(bam, "bam", "unfiltered.vcf") ug.vcfFile = swapExt(bam, "bam", "unfiltered.vcf")