From 894ad354fa13afb86f5990eaf88371b3eda53d79 Mon Sep 17 00:00:00 2001 From: kshakir Date: Fri, 25 Jun 2010 20:59:40 +0000 Subject: [PATCH] Fixed typo in the name of the shell directory. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3644 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/unifiedgenotyper_example.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/qscript/unifiedgenotyper_example.scala b/scala/qscript/unifiedgenotyper_example.scala index ecd21b00f..d21a1ef6c 100644 --- a/scala/qscript/unifiedgenotyper_example.scala +++ b/scala/qscript/unifiedgenotyper_example.scala @@ -11,7 +11,7 @@ for (bam <- inputs("bam")) { def commandLine = gatkCommandLine("VariantEval") + "-B eval,VCF,%s -o %s".format(vcfFile, evalFile) } - // Make sure the Sting/scripts folder is in your path to use mergeText.sh and splitIntervals.sh. + // Make sure the Sting/shell folder is in your path to use mergeText.sh and splitIntervals.sh. ug.scatterCount = 3 ug.bamFiles :+= bam ug.vcfFile = swapExt(bam, "bam", "unfiltered.vcf")