diff --git a/scala/qscript/unifiedgenotyper_example.scala b/scala/qscript/unifiedgenotyper_example.scala index ecd21b00f..d21a1ef6c 100644 --- a/scala/qscript/unifiedgenotyper_example.scala +++ b/scala/qscript/unifiedgenotyper_example.scala @@ -11,7 +11,7 @@ for (bam <- inputs("bam")) { def commandLine = gatkCommandLine("VariantEval") + "-B eval,VCF,%s -o %s".format(vcfFile, evalFile) } - // Make sure the Sting/scripts folder is in your path to use mergeText.sh and splitIntervals.sh. + // Make sure the Sting/shell folder is in your path to use mergeText.sh and splitIntervals.sh. ug.scatterCount = 3 ug.bamFiles :+= bam ug.vcfFile = swapExt(bam, "bam", "unfiltered.vcf")