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Fixing no platform warning message. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2682 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2010-01-25 19:46:50 +00:00
parent 2b51cf18f0
commit 894a2b511b
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/RecalDataManager.java
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@ -244,7 +244,7 @@ public class RecalDataManager {
if ( readGroup.getPlatform() == null ) { if ( readGroup.getPlatform() == null ) {
if( !warnUserNullPlatform ) { if( !warnUserNullPlatform ) {
Utils.warnUser("The input .bam file contains reads with no read group. " + Utils.warnUser("The input .bam file contains reads with no platform information. " +
"Defaulting to platform = " + RAC.DEFAULT_PLATFORM + ". " + "Defaulting to platform = " + RAC.DEFAULT_PLATFORM + ". " +
"First observed at read with name = " + read.getReadName() ); "First observed at read with name = " + read.getReadName() );
Utils.warnUser("Users may set the default platform using the --default_platform <String> argument."); Utils.warnUser("Users may set the default platform using the --default_platform <String> argument.");