From 894a2b511b2ad77d8bea7e15f7615b96aa6e705c Mon Sep 17 00:00:00 2001 From: rpoplin Date: Mon, 25 Jan 2010 19:46:50 +0000 Subject: [PATCH] Fixing no platform warning message. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2682 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/recalibration/RecalDataManager.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/RecalDataManager.java b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/RecalDataManager.java index f404e2b30..f021e3bff 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/RecalDataManager.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/RecalDataManager.java @@ -244,7 +244,7 @@ public class RecalDataManager { if ( readGroup.getPlatform() == null ) { if( !warnUserNullPlatform ) { - Utils.warnUser("The input .bam file contains reads with no read group. " + + Utils.warnUser("The input .bam file contains reads with no platform information. " + "Defaulting to platform = " + RAC.DEFAULT_PLATFORM + ". " + "First observed at read with name = " + read.getReadName() ); Utils.warnUser("Users may set the default platform using the --default_platform argument.");