diff --git a/public/java/test/org/broadinstitute/sting/utils/R/RScriptExecutorUnitTest.java b/public/java/test/org/broadinstitute/sting/utils/R/RScriptExecutorUnitTest.java index 1bbf74db9..836a4473f 100644 --- a/public/java/test/org/broadinstitute/sting/utils/R/RScriptExecutorUnitTest.java +++ b/public/java/test/org/broadinstitute/sting/utils/R/RScriptExecutorUnitTest.java @@ -26,21 +26,12 @@ package org.broadinstitute.sting.utils.R; import org.apache.commons.io.FileUtils; import org.broadinstitute.sting.BaseTest; -import org.broadinstitute.sting.gatk.walkers.diffengine.DiffElement; -import org.broadinstitute.sting.gatk.walkers.diffengine.DiffEngine; -import org.broadinstitute.sting.gatk.walkers.diffengine.DiffNode; -import org.broadinstitute.sting.gatk.walkers.diffengine.Difference; import org.broadinstitute.sting.utils.exceptions.UserException; -import org.testng.Assert; -import org.testng.annotations.BeforeClass; -import org.testng.annotations.DataProvider; import org.testng.annotations.Test; import java.io.File; import java.io.IOException; import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; import java.util.List; /** @@ -49,7 +40,6 @@ import java.util.List; public class RScriptExecutorUnitTest extends BaseTest { final static String testrscript = "print(\"hello, world\")\n"; final static String publicRScript = "plot_Tranches.R"; - final static String privateRScript = "variantCallQC.R"; // -------------------------------------------------------------------------------- // @@ -74,17 +64,6 @@ public class RScriptExecutorUnitTest extends BaseTest { @Test public void testPublic() { testOne(publicRScript, null, null, true); } - @Test - public void testPrivate() { testOne(privateRScript, null, null, true); } - - // make sure we don't break finding something in private by adding another directory - @Test - public void testPrivateWithAdditionalPath1() { testOne(privateRScript, null, "dist", true); } - - // make sure we don't break finding something in private by adding another directory - @Test - public void testPrivateWithAdditionalPath2() { testOne(privateRScript, null, "doesNotExist", true); } - @Test(expectedExceptions = UserException.class) public void testNonExistantScriptException() { testOne("does_not_exist.R", null, null, true); }