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Merged bug fix from Stable into Unstable

This commit is contained in:
David Roazen 2011-10-14 20:13:38 -04:00
parent aad99563be bd8bb93811
commit 88d6b8bc1f
1 changed files with 0 additions and 21 deletions
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21
public/java/test/org/broadinstitute/sting/utils/R/RScriptExecutorUnitTest.java
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@ -26,21 +26,12 @@ package org.broadinstitute.sting.utils.R;
import org.apache.commons.io.FileUtils;
import org.broadinstitute.sting.BaseTest;
import org.broadinstitute.sting.gatk.walkers.diffengine.DiffElement;
import org.broadinstitute.sting.gatk.walkers.diffengine.DiffEngine;
import org.broadinstitute.sting.gatk.walkers.diffengine.DiffNode;
import org.broadinstitute.sting.gatk.walkers.diffengine.Difference;
import org.broadinstitute.sting.utils.exceptions.UserException;
import org.testng.Assert;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.DataProvider;
import org.testng.annotations.Test;
import java.io.File;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
/**
@ -49,7 +40,6 @@ import java.util.List;
public class RScriptExecutorUnitTest extends BaseTest {
final static String testrscript = "print(\"hello, world\")\n";
final static String publicRScript = "plot_Tranches.R";
final static String privateRScript = "variantCallQC.R";
// --------------------------------------------------------------------------------
//
@ -74,17 +64,6 @@ public class RScriptExecutorUnitTest extends BaseTest {
@Test
public void testPublic() { testOne(publicRScript, null, null, true); }
@Test
public void testPrivate() { testOne(privateRScript, null, null, true); }
// make sure we don't break finding something in private by adding another directory
@Test
public void testPrivateWithAdditionalPath1() { testOne(privateRScript, null, "dist", true); }
// make sure we don't break finding something in private by adding another directory
@Test
public void testPrivateWithAdditionalPath2() { testOne(privateRScript, null, "doesNotExist", true); }
@Test(expectedExceptions = UserException.class)
public void testNonExistantScriptException() { testOne("does_not_exist.R", null, null, true); }