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Change vcf jar to use a classfileset to pull all dependencies. Should save 

Jim Robinson some detective work in the long run.
This commit is contained in:
Matt Hanna 2011-10-04 13:14:39 -04:00
parent 0acaf2df65
commit 88c2fad64f
1 changed files with 5 additions and 6 deletions
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11
build.xml
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@ -545,12 +545,11 @@
<target name="vcf.jar" depends="gatk.compile,init.jar">
<jar jarfile="${dist.dir}/vcf.jar">
<fileset dir="${java.classes}">
<include name="**/utils/codecs/**/*.class"/>
<include name="**/utils/variantcontext/**/*.class"/>
<include name="org/broadinstitute/sting/utils/exceptions/**"/>
<include name="org/broadinstitute/sting/utils/help/DocumentedGATKFeature.class"/>
</fileset>
<classfileset dir="${java.classes}">
<root classname="org.broadinstitute.sting.utils.variantcontext.VariantContext" />
<root classname="org.broadinstitute.sting.utils.codecs.vcf.VCFCodec" />
<root classname="org.broadinstitute.sting.utils.codecs.vcf.VCF3Codec" />
</classfileset>
</jar>
</target>