From 880a01cb5d363617941efb51e90109ec5091a056 Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 3 Aug 2009 19:18:41 +0000
Subject: [PATCH] Slight reorganization of genotype interface

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1367 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../utils/genotype/{variant => }/Variant.java |  0
 .../genotype/variant/VariantFrequency.java    | 28 -------------------
 2 files changed, 28 deletions(-)
 rename java/src/org/broadinstitute/sting/utils/genotype/{variant => }/Variant.java (100%)
 delete mode 100644 java/src/org/broadinstitute/sting/utils/genotype/variant/VariantFrequency.java

diff --git a/java/src/org/broadinstitute/sting/utils/genotype/variant/Variant.java b/java/src/org/broadinstitute/sting/utils/genotype/Variant.java
similarity index 100%
rename from java/src/org/broadinstitute/sting/utils/genotype/variant/Variant.java
rename to java/src/org/broadinstitute/sting/utils/genotype/Variant.java
diff --git a/java/src/org/broadinstitute/sting/utils/genotype/variant/VariantFrequency.java b/java/src/org/broadinstitute/sting/utils/genotype/variant/VariantFrequency.java
deleted file mode 100644
index 044429801..000000000
--- a/java/src/org/broadinstitute/sting/utils/genotype/variant/VariantFrequency.java
+++ /dev/null
@@ -1,28 +0,0 @@
-package org.broadinstitute.sting.utils.genotype.variant;
-
-
-/**
- * 
- * @author aaron 
- * 
- * Class VariantFrequency
- *
- * a class that represents the variant frequency, and could serve as a base for any other
- * variant frequency information (i.e. is it pop gen, from chip, etc).
- */
-public class VariantFrequency {
-
-    private double mFrequency;
-
-    /**
-     * create a variant frequency
-     * @param frequency
-     */
-    public VariantFrequency(double frequency) {
-        this.mFrequency = frequency;
-    }
-
-    public double getFrequency() {
-        return mFrequency;
-    }
-}