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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Guillermo del Angel 2011-07-21 13:35:24 -04:00
parent 84c66d4b92 2f5d10d16b
commit 87f991aee7
2 changed files with 4 additions and 3 deletions
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1
public/java/src/org/broadinstitute/sting/gatk/walkers/validation/ValidationAmplicons.java
View File

@ -233,6 +233,7 @@ public class ValidationAmplicons extends RodWalker<Integer,Integer> {
lowerRepeats();
} else {
lowerNonUniqueSegments();
aligner.close();
}
print();
}

6
public/java/test/org/broadinstitute/sting/gatk/walkers/validation/ValidationAmpliconsIntegrationTest.java
View File

@ -14,7 +14,7 @@ import java.util.Arrays;
*/
public class ValidationAmpliconsIntegrationTest extends WalkerTest {
@Test
@Test(enabled=true)
public void testWikiExample() {
String siteVCF = validationDataLocation + "sites_to_validate.vcf";
String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf";
@ -27,7 +27,7 @@ public class ValidationAmpliconsIntegrationTest extends WalkerTest {
executeTest("Test probes", spec);
}
@Test
@Test(enabled=true)
public void testWikiExampleNoBWA() {
String siteVCF = validationDataLocation + "sites_to_validate.vcf";
String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf";
@ -40,7 +40,7 @@ public class ValidationAmpliconsIntegrationTest extends WalkerTest {
executeTest("Test probes", spec);
}
@Test
@Test(enabled=true)
public void testWikiExampleMonoFilter() {
String siteVCF = validationDataLocation + "sites_to_validate.vcf";
String maskVCF = validationDataLocation + "amplicon_mask_sites.vcf";