From 87a63d54d62fd639237f7755e7d6bc6498709469 Mon Sep 17 00:00:00 2001 From: Christopher Hartl Date: Wed, 1 Feb 2012 12:05:29 -0500 Subject: [PATCH] fix the script! --- .../sting/queue/qscripts/lib/VcfToPed.scala | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala index 04f73d562..1c2620441 100644 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala @@ -63,10 +63,10 @@ class VcfToPed extends QScript { toPed.dbsnp = dbsnp toPed.variant = variants toPed.metaData = meta - lazy val base : String = bed.getName.stripSuffix(".bed")+"_%".format(chunk) - lazy val tBed = new File(tmpdir,base+".bed") - lazy val bim = new File(tmpdir,base+".bim") - lazy val fam = new File(tmpdir,base+".fam") + val base : String = bed.getName.stripSuffix(".bed")+"_%d".format(chunk) + val tBed = new File(tmpdir,base+".bed") + val bim = new File(tmpdir,base+".bim") + val fam = new File(tmpdir,base+".fam") toPed.bed = tBed toPed.bim = bim toPed.fam = fam @@ -89,10 +89,10 @@ class VcfToPed extends QScript { toPed.dbsnp = dbsnp toPed.variant = variants toPed.metaData = meta - lazy val base : String = bed.getName.stripSuffix(".bed")+"_%".format(chunk) - lazy val tBed = new File(tmpdir,base+".bed") - lazy val bim = new File(tmpdir,base+".bim") - lazy val fam = new File(tmpdir,base+".fam") + val base : String = bed.getName.stripSuffix(".bed")+"_%d".format(chunk) + val tBed = new File(tmpdir,base+".bed") + val bim = new File(tmpdir,base+".bim") + val fam = new File(tmpdir,base+".fam") toPed.bed = tBed toPed.bim = bim toPed.fam = fam