diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala index 04f73d562..1c2620441 100644 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala @@ -63,10 +63,10 @@ class VcfToPed extends QScript { toPed.dbsnp = dbsnp toPed.variant = variants toPed.metaData = meta - lazy val base : String = bed.getName.stripSuffix(".bed")+"_%".format(chunk) - lazy val tBed = new File(tmpdir,base+".bed") - lazy val bim = new File(tmpdir,base+".bim") - lazy val fam = new File(tmpdir,base+".fam") + val base : String = bed.getName.stripSuffix(".bed")+"_%d".format(chunk) + val tBed = new File(tmpdir,base+".bed") + val bim = new File(tmpdir,base+".bim") + val fam = new File(tmpdir,base+".fam") toPed.bed = tBed toPed.bim = bim toPed.fam = fam @@ -89,10 +89,10 @@ class VcfToPed extends QScript { toPed.dbsnp = dbsnp toPed.variant = variants toPed.metaData = meta - lazy val base : String = bed.getName.stripSuffix(".bed")+"_%".format(chunk) - lazy val tBed = new File(tmpdir,base+".bed") - lazy val bim = new File(tmpdir,base+".bim") - lazy val fam = new File(tmpdir,base+".fam") + val base : String = bed.getName.stripSuffix(".bed")+"_%d".format(chunk) + val tBed = new File(tmpdir,base+".bed") + val bim = new File(tmpdir,base+".bim") + val fam = new File(tmpdir,base+".fam") toPed.bed = tBed toPed.bim = bim toPed.fam = fam