From 874406352c537ed0c6230a8289e1a54581f8e1b0 Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 28 Feb 2011 04:15:30 +0000
Subject: [PATCH] Accidentally commited the N2 comparing test as well...

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5330 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/genotyper/ExactAFCalculationModel.java   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java
index e957c4ec0..d5c62cc8d 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModel.java
@@ -46,7 +46,7 @@ public class ExactAFCalculationModel extends AlleleFrequencyCalculationModel {
         LINEAR_EXPERIMENTAL
     }
 
-    private final static boolean COMPARE_TO_GS = true;
+    private final static boolean COMPARE_TO_GS = false;
     private final static double MAX_LOG10_ERROR_TO_STOP_EARLY = 6; // we want the calculation to be accurate to 1 / 10^6
 
     private boolean SIMPLE_GREEDY_GENOTYPER = false;