From 8703642142c685db56123c149e6382933baec972 Mon Sep 17 00:00:00 2001 From: Sheila Chandran Date: Tue, 9 May 2017 13:31:58 -0400 Subject: [PATCH] Change AC>1 to AC>0 --- .../engine/arguments/GenotypeCalculationArgumentCollection.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/engine/arguments/GenotypeCalculationArgumentCollection.java b/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/engine/arguments/GenotypeCalculationArgumentCollection.java index e683ec130..8d3698474 100644 --- a/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/engine/arguments/GenotypeCalculationArgumentCollection.java +++ b/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/engine/arguments/GenotypeCalculationArgumentCollection.java @@ -174,7 +174,7 @@ public class GenotypeCalculationArgumentCollection implements Cloneable{ * However, there are instances where using this prior might not be desirable, e.g. for population studies where prior * might not be appropriate, as for example when the ancestral status of the reference allele is not known. * - * This argument allows you to manually specify a list of probabilities for each AC>1 to be used as + * This argument allows you to manually specify a list of probabilities for each AC>0 to be used as * priors for genotyping, with the following restrictions: only diploid calls are supported; you must specify 2 * * N values where N is the number of samples; probability values must be positive and specified in Double format, * in linear space (not log10 space nor Phred-scale); and all values must sume to 1.